diff --git a/Doxyfile b/Doxyfile
index ae628d9cc..d730fed28 100644
--- a/Doxyfile
+++ b/Doxyfile
@@ -51,14 +51,14 @@ PROJECT_BRIEF          = "Connecting realtime powergrid simulators via IP/UDP"
 # and the maximum width should not exceed 200 pixels. Doxygen will copy the logo
 # to the output directory.
 
-PROJECT_LOGO           = doc/pictures/eonerc_logo.png
+PROJECT_LOGO           = documentation/pictures/eonerc_logo.png
 
 # The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute) path
 # into which the generated documentation will be written. If a relative path is
 # entered, it will be relative to the location where doxygen was started. If
 # left blank the current directory will be used.
 
-OUTPUT_DIRECTORY       = doc/
+OUTPUT_DIRECTORY       = documentation/
 
 # If the CREATE_SUBDIRS tag is set to YES, then doxygen will create 4096 sub-
 # directories (in 2 levels) under the output directory of each output format and
@@ -672,7 +672,7 @@ FILE_VERSION_FILTER    =
 # DoxygenLayout.xml, doxygen will parse it automatically even if the LAYOUT_FILE
 # tag is left empty.
 
-LAYOUT_FILE            = doc/layout.xml
+LAYOUT_FILE            = documentation/layout.xml
 
 # The CITE_BIB_FILES tag can be used to specify one or more bib files containing
 # the reference definitions. This must be a list of .bib files. The .bib
@@ -842,7 +842,7 @@ EXAMPLE_RECURSIVE      = NO
 # that contain images that are to be included in the documentation (see the
 # \image command).
 
-IMAGE_PATH             = doc/figures/
+IMAGE_PATH             = documentation/figures/
 
 # The INPUT_FILTER tag can be used to specify a program that doxygen should
 # invoke to filter for each input file. Doxygen will invoke the filter program
@@ -890,7 +890,7 @@ FILTER_SOURCE_PATTERNS =
 # (index.html). This can be useful if you have a project on for instance GitHub
 # and want to reuse the introduction page also for the doxygen output.
 
-USE_MDFILE_AS_MAINPAGE = doc/Mainpage.md
+USE_MDFILE_AS_MAINPAGE = documentation/Mainpage.md
 
 #---------------------------------------------------------------------------
 # Configuration options related to source browsing
@@ -1046,7 +1046,7 @@ HTML_FILE_EXTENSION    = .html
 # of the possible markers and block names see the documentation.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-HTML_HEADER            = doc/header.html
+HTML_HEADER            = documentation/header.html
 
 # The HTML_FOOTER tag can be used to specify a user-defined HTML footer for each
 # generated HTML page. If the tag is left blank doxygen will generate a standard
@@ -1079,7 +1079,7 @@ HTML_STYLESHEET        =
 # see the documentation.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-HTML_EXTRA_STYLESHEET  = doc/style.css
+HTML_EXTRA_STYLESHEET  = documentation/style.css
 
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
@@ -2249,7 +2249,7 @@ MSCFILE_DIRS           =
 # contain dia files that are included in the documentation (see the \diafile
 # command).
 
-DIAFILE_DIRS           = doc/figures/
+DIAFILE_DIRS           = documentation/figures/
 
 # The DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of nodes
 # that will be shown in the graph. If the number of nodes in a graph becomes